Variant report

Variant	rs16891829
Chromosome Location	chr4:15380910-15380911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10516286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947179	1.00[YRI][hapmap]
rs16891755	0.81[JPT][hapmap]
rs16891760	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16891838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861049	1.00[CEU][hapmap]
rs1861050	1.00[CEU][hapmap]
rs4235377	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408956	0.87[JPT][hapmap]
rs6836616	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15367600-15390600	Weak transcription	Spleen	Spleen
2	chr4:15377400-15385000	Weak transcription	Psoas Muscle	Psoas
3	chr4:15378000-15381000	Enhancers	Fetal Stomach	stomach
4	chr4:15378000-15384600	Weak transcription	Ovary	ovary
5	chr4:15378200-15384400	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:15378600-15401200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:15379000-15383400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:15380000-15385200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:15380000-15386000	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:15380400-15383200	Weak transcription	NHLF	lung
11	chr4:15380600-15381400	Weak transcription	Fetal Kidney	kidney
12	chr4:15380600-15383400	Weak transcription	Fetal Lung	lung
13	chr4:15380600-15385400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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