Variant report

Variant	rs16891760
Chromosome Location	chr4:15352357-15352358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10516286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16891755	0.87[JPT][hapmap];0.83[AMR][1000 genomes]
rs16891829	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16891838	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1861049	1.00[CEU][hapmap]
rs1861050	1.00[CEU][hapmap]
rs4235377	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4408956	0.81[JPT][hapmap]
rs6836616	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15342600-15355600	Weak transcription	Right Atrium	heart
2	chr4:15345800-15353800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:15348800-15352400	Enhancers	Fetal Kidney	kidney
4	chr4:15349400-15361000	Weak transcription	Spleen	Spleen
5	chr4:15349800-15355800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:15350400-15353200	Weak transcription	Aorta	Aorta
7	chr4:15350600-15352400	Enhancers	Fetal Lung	lung
8	chr4:15351200-15354200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:15351200-15355600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:15351400-15353000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:15351400-15353800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:15351400-15353800	Weak transcription	Fetal Stomach	stomach
13	chr4:15351400-15354000	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:15351400-15354200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:15351400-15356000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:15351400-15356000	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:15351600-15355000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:15351600-15356400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:15351800-15356400	Weak transcription	Primary B cells from cord blood	blood
20	chr4:15352000-15352400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:15352000-15354200	Weak transcription	Ovary	ovary
22	chr4:15352200-15352400	Enhancers	Brain Hippocampus Middle	brain

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