Variant report

Variant	rs441506
Chromosome Location	chr20:52851119-52851120
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52850887..52853833-chr20:52876658..52879639,2	MCF-7	breast:
2	chr20:52843581..52850062-chr20:52850195..52855343,9	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1293132	0.85[CEU][hapmap]
rs1418925	0.85[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes]
rs2585417	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2585418	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs292113	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs292118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs292119	0.85[ASN][1000 genomes]
rs292123	0.82[CEU][hapmap];0.83[YRI][hapmap]
rs292125	0.90[YRI][hapmap]
rs292126	0.82[CEU][hapmap]
rs3479	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs368933	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs391235	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs422066	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs422257	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs51301	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6013925	0.95[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs6013938	0.92[ASN][1000 genomes]
rs6013944	0.85[CEU][hapmap]
rs6091837	0.92[ASN][1000 genomes]
rs6123368	0.91[ASN][1000 genomes]
rs6127138	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52849400-52852800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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