Variant report

Variant	rs6091837
Chromosome Location	chr20:52847428-52847429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1418925	0.81[ASN][1000 genomes]
rs2585417	0.97[ASN][1000 genomes]
rs2585418	0.97[ASN][1000 genomes]
rs292113	0.92[ASN][1000 genomes]
rs292118	0.85[ASN][1000 genomes]
rs292119	0.85[ASN][1000 genomes]
rs3479	0.94[ASN][1000 genomes]
rs368933	0.87[ASN][1000 genomes]
rs391235	0.96[ASN][1000 genomes]
rs422257	0.96[ASN][1000 genomes]
rs441506	0.92[ASN][1000 genomes]
rs51301	0.85[ASN][1000 genomes]
rs6013925	0.83[ASN][1000 genomes]
rs6013938	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6123368	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6127138	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52829600-52847600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr20:52840600-52849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:52840800-52849000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr20:52841000-52851000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:52845600-52847800	Enhancers	Fetal Lung	lung
6	chr20:52847400-52847600	Enhancers	Aorta	Aorta
7	chr20:52847400-52848000	Enhancers	HSMMtube	muscle
8	chr20:52847400-52848200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr20:52847400-52848200	Enhancers	HSMM	muscle
10	chr20:52847400-52848400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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