Variant report
| Variant | rs4418993 |
|---|---|
| Chromosome Location | chr14:84865722-84865723 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10131334 | 0.98[AFR][1000 genomes] |
| rs10144393 | 0.87[AFR][1000 genomes] |
| rs12431750 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12880194 | 0.94[AFR][1000 genomes] |
| rs12891714 | 0.81[AFR][1000 genomes] |
| rs3924099 | 0.89[AFR][1000 genomes] |
| rs4259973 | 0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4299082 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4350506 | 0.95[AFR][1000 genomes] |
| rs4410004 | 0.93[AFR][1000 genomes] |
| rs4489939 | 0.93[AFR][1000 genomes] |
| rs4500652 | 0.93[AFR][1000 genomes] |
| rs55682233 | 0.84[AFR][1000 genomes] |
| rs7148496 | 0.93[AFR][1000 genomes] |
| rs7148700 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7151303 | 0.93[AFR][1000 genomes] |
| rs7158947 | 0.85[AFR][1000 genomes] |
| rs7160613 | 0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs71908900 | 0.81[AFR][1000 genomes] |
| rs8003576 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832845 | chr14:84726378-84900199 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:84865000-84876000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
