Variant report

Variant	rs4431371
Chromosome Location	chr5:37702906-37702907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:37702513..37704538-chr5:37716164..37718117,2	MCF-7	breast:
2	chr5:37667989..37670619-chr5:37702239..37705026,2	MCF-7	breast:
3	chr5:37702838..37705165-chr5:37705788..37708573,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10461983	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10461984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10941361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11749343	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11749345	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513493	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12517792	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12519774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12520294	0.89[ASN][1000 genomes]
rs12521092	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12651803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12656733	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs13154033	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13159969	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13171010	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13182520	0.87[ASN][1000 genomes]
rs13182737	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs13185923	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13187416	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1363925	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1862577	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2973086	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4869542	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs665327	0.83[CHB][hapmap]
rs677084	0.83[CHB][hapmap];1.00[YRI][hapmap]
rs682825	0.83[CHB][hapmap]
rs6897494	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7700431	0.83[CHB][hapmap]
rs781794	1.00[YRI][hapmap]
rs870100	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs9292665	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37684400-37705000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:37685200-37743200	Weak transcription	Gastric	stomach
3	chr5:37685400-37717600	Weak transcription	Pancreas	Pancrea
4	chr5:37685600-37711200	Weak transcription	Fetal Stomach	stomach
5	chr5:37685600-37727000	Weak transcription	Lung	lung
6	chr5:37687200-37720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:37688400-37721400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:37688400-37721400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:37688400-37723600	Weak transcription	Placenta	Placenta
10	chr5:37689600-37726000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:37692200-37721200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:37693800-37705200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:37695200-37716600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:37695400-37706000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr5:37695400-37715600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:37695400-37722600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr5:37695600-37703000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:37695600-37706400	Weak transcription	Liver	Liver
19	chr5:37695600-37721200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr5:37695800-37705200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:37696000-37717000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr5:37696200-37709800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr5:37696400-37717200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:37696600-37704600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr5:37696800-37703000	Weak transcription	Fetal Lung	lung
26	chr5:37696800-37710400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:37696800-37711200	Weak transcription	HSMMtube	muscle
28	chr5:37696800-37717000	Weak transcription	HSMM	muscle
29	chr5:37696800-37717400	Weak transcription	Small Intestine	intestine
30	chr5:37696800-37722800	Weak transcription	Psoas Muscle	Psoas
31	chr5:37697000-37705800	Weak transcription	Brain Anterior Caudate	brain
32	chr5:37697000-37706000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:37697000-37717000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr5:37697000-37721400	Weak transcription	Fetal Thymus	thymus
35	chr5:37697000-37743800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr5:37697200-37710400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:37697200-37710400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr5:37697200-37717000	Weak transcription	NH-A	brain
39	chr5:37697400-37703200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr5:37697400-37705000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:37697400-37706000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr5:37697400-37710200	Weak transcription	NHDF-Ad	bronchial
43	chr5:37697400-37711000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:37697400-37717000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr5:37697400-37717200	Weak transcription	Hela-S3	cervix
46	chr5:37697400-37722200	Weak transcription	HMEC	breast
47	chr5:37697800-37703000	Weak transcription	Left Ventricle	heart
48	chr5:37698000-37705000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr5:37698800-37716400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:37698800-37721000	Weak transcription	Dnd41	blood

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