Variant report

Variant	rs4433364
Chromosome Location	chr1:67268338-67268339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:67268315-67268365	AG10803	skin:	n/a
2	chr1:67268315-67268365	HUVEC	blood vessel:	n/a
3	chr1:67268315-67268365	GM12891	blood:	n/a
4	chr1:67268315-67268365	SK-N-MC	brain:	n/a
5	chr1:67268315-67268365	ovcar-3	ovarian:	n/a
6	chr1:67268315-67268365	HL-60	blood:	n/a
7	chr1:67268315-67268365	PFSK-1	brain:	n/a
8	chr1:67268315-67268365	AG04450	lung:	fetal
9	chr1:67268315-67268365	HAEpiC	amniotic membrane:	n/a
10	chr1:67268315-67268365	HCPEpiC	choroid plexus:	n/a
11	chr1:67268315-67268365	SKMC	muscle:	n/a
12	chr1:67268315-67268365	HIPEpiC	eye:	n/a
13	chr1:67268315-67268365	SAEC	small airway:	n/a
14	chr1:67268315-67268365	PANC-1	pancreas:	n/a
15	chr1:67268315-67268365	GM12878	blood:	n/a
16	chr1:67268315-67268365	NH-A	brain:	n/a
17	chr1:67268315-67268365	AoSMC	blood vessel:	n/a
18	chr1:67268315-67268365	GM19239	blood:	n/a
19	chr1:67268315-67268365	HRE	kidney:	n/a
20	chr1:67268315-67268365	NHBE	bronchial:	n/a
21	chr1:67268315-67268365	ProgFib	skin:	n/a
22	chr1:67268315-67268365	GM06990	blood:	n/a
23	chr1:67268315-67268365	Jurkat	blood:	n/a
24	chr1:67268315-67268365	LNCaP	prostate:	n/a
25	chr1:67268315-67268365	HepG2	liver:	n/a
26	chr1:67268315-67268365	PrEC	prostate:	n/a
27	chr1:67268315-67268365	H1-hESC	embryonic stem cell:	embryo
28	chr1:67268315-67268365	U87	brain:	n/a
29	chr1:67268315-67268365	NT2-D1	testis:	n/a
30	chr1:67268315-67268365	HNPCEpiC	eye:	n/a
31	chr1:67268315-67268365	CMK	blood:	n/a
32	chr1:67268315-67268365	HCF	heart:	n/a
33	chr1:67268315-67268365	MCF-7	breast:	n/a
34	chr1:67268315-67268365	HEEpiC	esophagus:	n/a
35	chr1:67268315-67268365	HCM	heart:	n/a
36	chr1:67268315-67268365	BJ	skin:	n/a
37	chr1:67268315-67268365	BE2_C	brain:	n/a
38	chr1:67268315-67268365	AG09319	gingival:	n/a
39	chr1:67268315-67268365	NB4	blood:	n/a
40	chr1:67268315-67268365	AG09309	skin:	n/a
41	chr1:67268315-67268365	HRCEpiC	kidney:	n/a
42	chr1:67268315-67268365	GM12892	blood:	n/a
43	chr1:67268315-67268365	SK-N-SH_RA	brain:	n/a
44	chr1:67268315-67268365	AG04449	skin:	fetal
45	chr1:67268315-67268365	T-47D	breast:	n/a
46	chr1:67268315-67268365	Hepatocyte	liver:	n/a
47	chr1:67268315-67268365	HRPEpiC	eye:	n/a
48	chr1:67268315-67268365	HMEC	breast:	n/a
49	chr1:67268315-67268365	Hela-S3	cervix:	n/a
50	chr1:67268315-67268365	ECC-1	luminal epithelium:	n/a

No data

Variant related genes	Relation type
INSL5	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11208960	1.00[CHD][hapmap]
rs11809759	1.00[CHD][hapmap]
rs1353716	0.92[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17442592	1.00[CHD][hapmap]
rs2221082	0.91[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501297	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4433364	DNAJC6	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links