Variant report

Variant	rs17442592
Chromosome Location	chr1:67267242-67267243
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11208960	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11589326	1.00[ASW][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs11809759	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1353716	1.00[CHD][hapmap]
rs2147836	1.00[JPT][hapmap]
rs269395	1.00[JPT][hapmap]
rs41300323	0.84[AMR][1000 genomes]
rs4433364	1.00[CHD][hapmap]
rs496070	1.00[JPT][hapmap]
rs520717	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6702554	1.00[JPT][hapmap]
rs6703322	1.00[JPT][hapmap]
rs7535403	1.00[JPT][hapmap]
rs9659043	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links