Variant report

Variant	rs4433560
Chromosome Location	chr11:45253866-45253867
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45245651..45250256-chr11:45251414..45255574,6	K562	blood:
2	chr11:45247268..45250256-chr11:45252250..45254749,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10838430	0.89[TSI][hapmap]
rs11038359	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2863156	0.82[TSI][hapmap]
rs2863161	0.86[LWK][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.80[AFR][1000 genomes]
rs2863168	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2863169	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2863171	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4755947	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7126559	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73466442	0.82[AMR][1000 genomes]
rs7480089	0.89[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4433560	OR4X2	cis	parietal	SCAN

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:45235600-45255000	Strong transcription	Fetal Stomach	stomach
3	chr11:45239400-45257200	Weak transcription	Right Atrium	heart
4	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:45245200-45255200	Weak transcription	Hela-S3	cervix
6	chr11:45246000-45254800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:45247800-45255000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:45248200-45254800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:45248200-45255200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:45248400-45254800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:45248800-45254800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:45248800-45254800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:45249000-45254000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:45249000-45254800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:45249000-45255000	Weak transcription	Pancreas	Pancrea
17	chr11:45249200-45255000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:45249200-45255000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:45249400-45254200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:45249400-45255000	Weak transcription	Brain Anterior Caudate	brain
21	chr11:45249400-45255000	Weak transcription	Placenta	Placenta
22	chr11:45249400-45255200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr11:45249600-45254800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:45249600-45254800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:45249600-45254800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:45249600-45255000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:45249600-45255000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:45249600-45255000	Weak transcription	Fetal Heart	heart
29	chr11:45249600-45255000	Weak transcription	Right Ventricle	heart
30	chr11:45249600-45257400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:45249600-45257600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:45249800-45254000	Weak transcription	Fetal Brain Female	brain
33	chr11:45249800-45255000	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:45249800-45255000	Weak transcription	Ovary	ovary
35	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
36	chr11:45250000-45257400	Weak transcription	Lung	lung
37	chr11:45250200-45254400	Weak transcription	Aorta	Aorta
38	chr11:45250200-45255200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:45250200-45255200	Weak transcription	Brain Angular Gyrus	brain
40	chr11:45250200-45255200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:45250600-45255000	Weak transcription	Left Ventricle	heart
42	chr11:45250800-45256800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:45250800-45257200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:45250800-45257600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:45250800-45259200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:45251000-45257800	Weak transcription	Brain Germinal Matrix	brain
47	chr11:45251200-45254200	Weak transcription	Fetal Lung	lung
48	chr11:45251600-45254600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:45251600-45257000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:45251600-45257000	Strong transcription	Fetal Intestine Small	intestine

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