Variant report

Variant	rs2863171
Chromosome Location	chr11:45250732-45250733
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45166849..45169188-chr11:45250056..45252141,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10838430	0.93[TSI][hapmap]
rs11038359	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2863156	0.85[TSI][hapmap]
rs2863161	0.86[LWK][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes]
rs2863168	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2863169	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4433560	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4755947	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6416127	0.82[TSI][hapmap]
rs7126559	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73466442	0.87[AMR][1000 genomes]
rs7480089	0.93[TSI][hapmap]

Variant related diseases (count:1)

Disease	PMID	Source
Forced vital capacity	24929828	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2863171	OR4X2	cis	parietal	SCAN

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr11:45206600-45251600	Weak transcription	HepG2	liver
3	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:45235600-45251800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:45235600-45255000	Strong transcription	Fetal Stomach	stomach
7	chr11:45237200-45252400	Weak transcription	Psoas Muscle	Psoas
8	chr11:45239400-45257200	Weak transcription	Right Atrium	heart
9	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:45240400-45251600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:45240400-45252000	Strong transcription	Fetal Muscle Leg	muscle
12	chr11:45240800-45250800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:45240800-45251400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:45241000-45251000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:45241000-45252400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr11:45241200-45250800	Strong transcription	Stomach Smooth Muscle	stomach
17	chr11:45241800-45251200	Strong transcription	Fetal Lung	lung
18	chr11:45245200-45250800	Strong transcription	Brain Cingulate Gyrus	brain
19	chr11:45245200-45251000	Strong transcription	Brain Germinal Matrix	brain
20	chr11:45245200-45255200	Weak transcription	Hela-S3	cervix
21	chr11:45245600-45250800	Strong transcription	Fetal Intestine Small	intestine
22	chr11:45245800-45250800	Strong transcription	Primary B cells from cord blood	blood
23	chr11:45246000-45254800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:45247800-45255000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr11:45248200-45254800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:45248200-45255200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:45248400-45254800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:45248600-45250800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:45248600-45250800	Weak transcription	Small Intestine	intestine
30	chr11:45248600-45252400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:45248800-45250800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:45248800-45251200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:45248800-45251200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:45248800-45251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:45248800-45254800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:45248800-45254800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:45249000-45251200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:45249000-45252000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:45249000-45252000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:45249000-45252600	Strong transcription	Fetal Intestine Large	intestine
42	chr11:45249000-45254000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:45249000-45254800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:45249000-45255000	Weak transcription	Pancreas	Pancrea
45	chr11:45249200-45251200	Weak transcription	Colonic Mucosa	Colon
46	chr11:45249200-45251400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:45249200-45255000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:45249200-45255000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:45249400-45251000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr11:45249400-45251200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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