Variant report

Variant	rs6416127
Chromosome Location	chr11:45239959-45239960
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10742746	0.85[EUR][1000 genomes]
rs10838430	0.89[TSI][hapmap]
rs10838435	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038356	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11038361	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs2863156	0.82[TSI][hapmap]
rs2863159	0.85[CEU][hapmap];0.93[CHD][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs2863161	0.89[TSI][hapmap]
rs2863166	0.82[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2863167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2863168	0.80[EUR][1000 genomes]
rs2863169	0.80[EUR][1000 genomes]
rs2863171	0.82[TSI][hapmap]
rs3740783	0.96[ASN][1000 genomes]
rs3758722	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3758728	0.93[CHD][hapmap]
rs4755948	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6416128	0.99[ASN][1000 genomes]
rs6485601	0.96[ASN][1000 genomes]
rs6485602	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs714417	0.94[ASW][hapmap];0.90[MKK][hapmap];0.88[YRI][hapmap]
rs73466442	0.80[EUR][1000 genomes]
rs746555	0.99[ASN][1000 genomes]
rs7480089	0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3340181	chr11:45239747-45240009	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr11:45206600-45251600	Weak transcription	HepG2	liver
4	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:45227400-45241600	Weak transcription	Primary B cells from cord blood	blood
8	chr11:45227400-45242600	Weak transcription	Liver	Liver
9	chr11:45227800-45247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:45229000-45246600	Weak transcription	Primary T cells from cord blood	blood
11	chr11:45231400-45242400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:45232000-45247600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:45232200-45247600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:45232200-45247800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:45232400-45241000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:45232400-45241800	Weak transcription	Fetal Kidney	kidney
17	chr11:45232400-45247000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:45232400-45247600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:45232400-45247800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:45232400-45247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:45232400-45247800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:45232400-45250400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:45232600-45245200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:45232600-45247000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:45232800-45246000	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:45232800-45247200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:45232800-45248000	Weak transcription	Fetal Brain Male	brain
29	chr11:45233000-45245000	Weak transcription	Hela-S3	cervix
30	chr11:45233000-45245400	Weak transcription	Brain Substantia Nigra	brain
31	chr11:45233600-45248800	Weak transcription	Fetal Heart	heart
32	chr11:45233800-45246400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr11:45234600-45241000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:45234600-45242400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:45234800-45247000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:45235000-45241000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:45235000-45245000	Weak transcription	Brain Angular Gyrus	brain
38	chr11:45235000-45247200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:45235000-45247200	Weak transcription	Placenta	Placenta
40	chr11:45235200-45240800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:45235200-45241000	Weak transcription	Ovary	ovary
42	chr11:45235200-45241200	Weak transcription	Brain Anterior Caudate	brain
43	chr11:45235200-45241400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:45235200-45242200	Weak transcription	Fetal Brain Female	brain
45	chr11:45235200-45242600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:45235200-45245600	Weak transcription	Gastric	stomach
47	chr11:45235200-45246000	Weak transcription	A549	lung
48	chr11:45235200-45246400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:45235200-45247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:45235200-45247600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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