Variant report

Variant	rs11038361
Chromosome Location	chr11:45248372-45248373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45245651..45250256-chr11:45251414..45255574,6	K562	blood:
2	chr11:45184640..45186467-chr11:45245800..45248700,2	MCF-7	breast:
3	chr11:45166955..45170393-chr11:45245882..45249087,3	K562	blood:
4	chr11:45167836..45170393-chr11:45247199..45249087,2	K562	blood:
5	chr11:45247268..45250256-chr11:45252250..45254749,3	K562	blood:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10742744	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10742745	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1078930	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10838426	0.95[EUR][1000 genomes]
rs10838435	0.99[ASN][1000 genomes]
rs11038356	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281438	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2863159	0.88[CHD][hapmap]
rs2863166	0.95[ASN][1000 genomes]
rs2863167	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs3740783	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3758722	0.82[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758728	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3781706	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4755948	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6416127	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs6416128	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485594	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6485595	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6485596	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6485597	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6485598	1.00[CEU][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6485599	1.00[EUR][1000 genomes]
rs6485601	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485602	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.86[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746555	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937949	0.95[EUR][1000 genomes]
rs7942214	0.87[EUR][1000 genomes]
rs7942347	0.87[EUR][1000 genomes]
rs7945018	1.00[EUR][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr11:45206600-45251600	Weak transcription	HepG2	liver
3	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:45232400-45250400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:45233600-45248800	Weak transcription	Fetal Heart	heart
7	chr11:45235600-45251800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:45235600-45255000	Strong transcription	Fetal Stomach	stomach
9	chr11:45237200-45252400	Weak transcription	Psoas Muscle	Psoas
10	chr11:45239400-45257200	Weak transcription	Right Atrium	heart
11	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:45240400-45251600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:45240400-45252000	Strong transcription	Fetal Muscle Leg	muscle
14	chr11:45240800-45250600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:45240800-45250800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:45240800-45251400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:45241000-45248400	Strong transcription	Lung	lung
18	chr11:45241000-45249600	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr11:45241000-45249800	Strong transcription	Ovary	ovary
20	chr11:45241000-45251000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:45241000-45252400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr11:45241200-45250800	Strong transcription	Stomach Smooth Muscle	stomach
23	chr11:45241400-45250600	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:45241800-45251200	Strong transcription	Fetal Lung	lung
25	chr11:45242000-45249600	Strong transcription	Primary hematopoietic stem cells	blood
26	chr11:45242200-45249800	Strong transcription	Fetal Brain Female	brain
27	chr11:45242400-45249800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:45242600-45249600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr11:45243800-45249600	Strong transcription	Right Ventricle	heart
30	chr11:45244000-45249000	Strong transcription	Pancreas	Pancrea
31	chr11:45245000-45249400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:45245000-45249400	Strong transcription	Brain Anterior Caudate	brain
33	chr11:45245000-45249800	Strong transcription	Brain Hippocampus Middle	brain
34	chr11:45245000-45250200	Strong transcription	Liver	Liver
35	chr11:45245000-45250200	Strong transcription	Brain Angular Gyrus	brain
36	chr11:45245200-45248600	Strong transcription	Fetal Intestine Large	intestine
37	chr11:45245200-45249400	Strong transcription	Esophagus	oesophagus
38	chr11:45245200-45249800	Strong transcription	Spleen	Spleen
39	chr11:45245200-45250200	Strong transcription	Aorta	Aorta
40	chr11:45245200-45250800	Strong transcription	Brain Cingulate Gyrus	brain
41	chr11:45245200-45251000	Strong transcription	Brain Germinal Matrix	brain
42	chr11:45245200-45255200	Weak transcription	Hela-S3	cervix
43	chr11:45245400-45249400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:45245400-45250000	Strong transcription	Placenta Amnion	Placenta Amnion
45	chr11:45245600-45249200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:45245600-45249600	Strong transcription	Gastric	stomach
47	chr11:45245600-45250800	Strong transcription	Fetal Intestine Small	intestine
48	chr11:45245800-45250800	Strong transcription	Primary B cells from cord blood	blood
49	chr11:45246000-45249400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:45246000-45249600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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