Variant report

Variant	rs3740783
Chromosome Location	chr11:45255075-45255076
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45245651..45250256-chr11:45251414..45255574,6	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10838435	0.97[ASN][1000 genomes]
rs11038356	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11038361	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2863166	0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs2863167	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3758722	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4755942	1.00[CEU][hapmap]
rs4755948	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6416127	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6416128	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6485601	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6485602	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs746555	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:45239400-45257200	Weak transcription	Right Atrium	heart
3	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:45245200-45255200	Weak transcription	Hela-S3	cervix
5	chr11:45248200-45255200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:45249400-45255200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:45249600-45257400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:45249600-45257600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
11	chr11:45250000-45257400	Weak transcription	Lung	lung
12	chr11:45250200-45255200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:45250200-45255200	Weak transcription	Brain Angular Gyrus	brain
14	chr11:45250200-45255200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:45250800-45256800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:45250800-45257200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:45250800-45257600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:45250800-45259200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:45251000-45257800	Weak transcription	Brain Germinal Matrix	brain
20	chr11:45251600-45257000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:45251600-45257000	Strong transcription	Fetal Intestine Small	intestine
22	chr11:45252600-45264600	Weak transcription	Fetal Intestine Large	intestine
23	chr11:45253800-45255400	Enhancers	Fetal Brain Male	brain
24	chr11:45253800-45255400	Enhancers	Fetal Muscle Leg	muscle
25	chr11:45253800-45255600	Enhancers	Fetal Muscle Trunk	muscle
26	chr11:45254600-45255200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr11:45254800-45255200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr11:45254800-45255200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:45254800-45255400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr11:45254800-45255400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:45254800-45255800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:45254800-45256200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:45254800-45259400	Weak transcription	Fetal Brain Female	brain
34	chr11:45255000-45255200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:45255000-45255200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:45255000-45255200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
37	chr11:45255000-45255200	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr11:45255000-45255200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr11:45255000-45255200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:45255000-45255200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:45255000-45255200	Enhancers	Brain Anterior Caudate	brain
42	chr11:45255000-45255200	Enhancers	Fetal Heart	heart
43	chr11:45255000-45255200	Enhancers	Placenta	Placenta
44	chr11:45255000-45255200	Enhancers	Pancreas	Pancrea
45	chr11:45255000-45255400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:45255000-45255400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:45255000-45255400	Enhancers	Left Ventricle	heart
48	chr11:45255000-45255400	Enhancers	Ovary	ovary
49	chr11:45255000-45255400	Enhancers	Right Ventricle	heart
50	chr11:45255000-45255600	Enhancers	Brain Hippocampus Middle	brain

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