The 2.0 version of rSNPBase

Variant report

Variant rs6485601
Chromosome Location chr11:45236638-45236639
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:45203000-45237000 Weak transcription Small Intestine intestine
2 chr11:45205800-45238800 Weak transcription HSMMtube muscle
3 chr11:45205800-45251800 Weak transcription Primary T helper cells PMA-I stimulated --
4 chr11:45206000-45247800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr11:45206600-45251600 Weak transcription HepG2 liver
6 chr11:45210200-45247600 Weak transcription H9 Cell Line embryonic stem cell
7 chr11:45210200-45251600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr11:45224800-45247800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr11:45227400-45241600 Weak transcription Primary B cells from cord blood blood
10 chr11:45227400-45242600 Weak transcription Liver Liver
11 chr11:45227800-45247400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr11:45229000-45246600 Weak transcription Primary T cells from cord blood blood
13 chr11:45229200-45237400 Genic enhancers Fetal Muscle Leg muscle
14 chr11:45229800-45236800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
15 chr11:45231400-45242400 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr11:45232000-45239200 Weak transcription NH-A brain
17 chr11:45232000-45247600 Weak transcription HUES64 Cell Line embryonic stem cell
18 chr11:45232200-45247600 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr11:45232200-45247800 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr11:45232400-45236800 Genic enhancers Fetal Muscle Trunk muscle
21 chr11:45232400-45241000 Weak transcription Primary hematopoietic stem cells blood
22 chr11:45232400-45241800 Weak transcription Fetal Kidney kidney
23 chr11:45232400-45247000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr11:45232400-45247600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr11:45232400-45247800 Weak transcription H1 Cell Line embryonic stem cell
26 chr11:45232400-45247800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr11:45232400-45247800 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr11:45232400-45250400 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr11:45232600-45238000 Strong transcription Fetal Intestine Large intestine
30 chr11:45232600-45238000 Strong transcription Fetal Intestine Small intestine
31 chr11:45232600-45245200 Weak transcription Brain Cingulate Gyrus brain
32 chr11:45232600-45247000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr11:45232600-45255200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr11:45232800-45246000 Weak transcription Colon Smooth Muscle Colon
35 chr11:45232800-45247200 Weak transcription Rectal Smooth Muscle rectum
36 chr11:45232800-45248000 Weak transcription Fetal Brain Male brain
37 chr11:45233000-45245000 Weak transcription Hela-S3 cervix
38 chr11:45233000-45245400 Weak transcription Brain Substantia Nigra brain
39 chr11:45233200-45236800 Strong transcription Fetal Lung lung
40 chr11:45233400-45237000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr11:45233600-45248800 Weak transcription Fetal Heart heart
42 chr11:45233800-45246400 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr11:45234600-45241000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
44 chr11:45234600-45242400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr11:45234800-45237400 Enhancers Skeletal Muscle Female skeletal muscle
46 chr11:45234800-45247000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr11:45235000-45237200 Enhancers Psoas Muscle Psoas
48 chr11:45235000-45241000 Weak transcription Primary B cells from peripheral blood blood
49 chr11:45235000-45245000 Weak transcription Brain Angular Gyrus brain
50 chr11:45235000-45247200 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015