Variant report

Variant	rs3781706
Chromosome Location	chr11:45211360-45211361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45165683..45169162-chr11:45207183..45212021,4	K562	blood:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10742743	0.82[JPT][hapmap]
rs10742744	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10742745	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10742746	0.99[ASN][1000 genomes]
rs1078930	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838425	0.82[JPT][hapmap]
rs10838426	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11038356	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11038361	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12281438	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2863159	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3758722	0.87[EUR][1000 genomes]
rs3758728	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4755948	0.87[EUR][1000 genomes]
rs4755953	0.82[JPT][hapmap]
rs6416128	0.87[EUR][1000 genomes]
rs6485594	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6485595	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6485596	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6485597	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6485598	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6485599	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485601	0.87[EUR][1000 genomes]
rs6485602	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs746555	0.87[EUR][1000 genomes]
rs7937949	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7942214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7942347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7945018	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45202000-45220000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:45202800-45234000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:45203000-45213400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:45203000-45237000	Weak transcription	Small Intestine	intestine
5	chr11:45203200-45212400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:45203200-45213000	Weak transcription	HSMM	muscle
7	chr11:45203200-45215200	Weak transcription	Psoas Muscle	Psoas
8	chr11:45203400-45215200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:45203400-45217600	Weak transcription	NH-A	brain
10	chr11:45203400-45221200	Weak transcription	NHEK	skin
11	chr11:45203400-45230400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:45203400-45231000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:45203600-45211600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:45203600-45226200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:45203600-45231000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:45203800-45212600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:45204400-45211600	Strong transcription	Ovary	ovary
18	chr11:45204400-45211800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:45204400-45213400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:45204600-45212600	Strong transcription	Fetal Muscle Leg	muscle
21	chr11:45204600-45213000	Strong transcription	Stomach Smooth Muscle	stomach
22	chr11:45204800-45211800	Strong transcription	Adipose Nuclei	Adipose
23	chr11:45204800-45214600	Strong transcription	Fetal Lung	lung
24	chr11:45205000-45211400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:45205000-45214200	Strong transcription	Fetal Stomach	stomach
26	chr11:45205200-45230400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:45205600-45212800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:45205800-45213200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:45205800-45226400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:45205800-45238800	Weak transcription	HSMMtube	muscle
31	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:45206000-45212600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:45206400-45226000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:45206600-45251600	Weak transcription	HepG2	liver
36	chr11:45206800-45211600	Strong transcription	Lung	lung
37	chr11:45206800-45213600	Weak transcription	Fetal Heart	heart
38	chr11:45206800-45215200	Weak transcription	Right Atrium	heart
39	chr11:45207000-45232400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr11:45207200-45212400	Strong transcription	Fetal Intestine Small	intestine
41	chr11:45207200-45222000	Strong transcription	Fetal Intestine Large	intestine
42	chr11:45207200-45230200	Weak transcription	Colonic Mucosa	Colon
43	chr11:45207600-45229400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:45207800-45211600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:45207800-45214200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:45208200-45212600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:45208400-45211800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:45208600-45214400	Strong transcription	A549	lung
49	chr11:45209000-45235200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:45209200-45211800	Strong transcription	Spleen	Spleen

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