Variant report

Variant	rs2863159
Chromosome Location	chr11:45197060-45197061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45196994..45199471-chr11:45201318..45203676,2	K562	blood:
2	chr11:45167337..45170227-chr11:45194367..45197108,2	MCF-7	breast:
3	chr11:45197003..45199885-chr11:45200062..45203295,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10742743	0.81[JPT][hapmap]
rs10742744	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10742745	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10742746	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1078930	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10838425	0.82[JPT][hapmap]
rs10838426	0.83[ASN][1000 genomes]
rs10838430	0.86[TSI][hapmap]
rs10838435	0.87[EUR][1000 genomes]
rs11038356	0.85[CHD][hapmap]
rs11038361	0.88[CHD][hapmap]
rs12281438	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2863161	0.86[TSI][hapmap]
rs2863166	0.88[EUR][1000 genomes]
rs2863167	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs3758722	0.90[CHD][hapmap]
rs3758728	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3781706	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4755953	0.82[JPT][hapmap]
rs6416127	0.85[CEU][hapmap];0.93[CHD][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs6485594	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6485595	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6485596	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6485597	0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6485598	0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6485599	0.94[ASN][1000 genomes]
rs6485602	0.88[CHD][hapmap]
rs7480089	0.86[TSI][hapmap]
rs7937949	0.88[ASN][1000 genomes]
rs7942214	0.98[ASN][1000 genomes]
rs7942347	0.98[ASN][1000 genomes]
rs7945018	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1048493	chr11:45166054-45205695	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2863159	DDB2	cis	parietal	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45183600-45200400	Weak transcription	Esophagus	oesophagus
2	chr11:45183800-45201200	Weak transcription	Gastric	stomach
3	chr11:45186400-45201200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:45186600-45201400	Weak transcription	Fetal Brain Female	brain
5	chr11:45186800-45200600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:45190600-45198400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:45191200-45199000	Weak transcription	Fetal Stomach	stomach
8	chr11:45191600-45198400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:45191800-45198600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:45192200-45198000	Weak transcription	Pancreas	Pancrea
11	chr11:45192200-45198400	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:45192400-45198400	Weak transcription	Ovary	ovary
13	chr11:45192400-45198400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:45192400-45198600	Weak transcription	Right Ventricle	heart
15	chr11:45192400-45200400	Weak transcription	Lung	lung
16	chr11:45192400-45201200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:45192600-45198800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:45193200-45199800	Weak transcription	Spleen	Spleen
19	chr11:45193400-45198400	Weak transcription	Right Atrium	heart
20	chr11:45193400-45200400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr11:45193400-45200400	Weak transcription	Left Ventricle	heart
22	chr11:45194800-45198600	Weak transcription	Hela-S3	cervix
23	chr11:45194800-45200800	Weak transcription	A549	lung
24	chr11:45194800-45201200	Weak transcription	Stomach Mucosa	stomach
25	chr11:45195400-45201000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:45195400-45201400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:45195800-45198400	Weak transcription	Fetal Intestine Small	intestine
28	chr11:45196200-45201200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:45196600-45201000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:45196800-45200800	Weak transcription	Fetal Intestine Large	intestine
31	chr11:45197000-45198400	Weak transcription	Liver	Liver
32	chr11:45197000-45200800	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links