Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:45165151-45169153	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr11:45165388-45166420	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45165135..45167115-chr11:45369738..45371244,2	MCF-7	breast:
2	chr11:45164160..45171283-chr11:45198764..45207868,26	MCF-7	breast:

Variant related genes	Relation type
PRDM11	TF binding region
ENSG00000019485	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10742737	0.92[CEU][hapmap]
rs10742744	0.82[JPT][hapmap]
rs10742745	0.81[JPT][hapmap]
rs1078930	0.82[JPT][hapmap]
rs10838425	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038305	0.93[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11038306	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12281438	0.86[JPT][hapmap]
rs1487720	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs2863159	0.81[JPT][hapmap]
rs3758728	0.81[JPT][hapmap]
rs3781706	0.82[JPT][hapmap]
rs4495881	0.95[EUR][1000 genomes]
rs4755953	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6485592	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485594	0.85[JPT][hapmap]
rs6485595	0.87[JPT][hapmap]
rs6485596	0.85[JPT][hapmap]
rs6485597	0.86[JPT][hapmap]
rs6485598	0.86[JPT][hapmap]
rs7107896	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs7124466	0.93[CEU][hapmap]
rs7929875	0.85[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9667741	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv541025	chr11:45154352-45193352	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45164200-45167000	Weak transcription	Right Atrium	heart
2	chr11:45164400-45167000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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