Variant report

Variant	rs7107896
Chromosome Location	chr11:45132387-45132388
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45131908..45132443-chr11:45314864..45315797,3	MCF-7	breast:
2	chr11:45132296..45132833-chr11:45314883..45315821,3	K562	blood:
3	chr11:45132270..45133037-chr11:45273783..45274543,2	MCF-7	breast:
4	chr11:45132082..45133595-chr11:45353521..45354803,7	MCF-7	breast:
5	chr11:45131918..45132817-chr11:45353622..45354653,9	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10742737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10742739	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10742743	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs10769120	0.85[CHB][hapmap]
rs10838415	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10838418	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10838425	0.86[CEU][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs11038304	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11038305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11038306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11038308	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1116961	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1487720	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs1586466	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1960774	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4495881	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4755953	0.86[CEU][hapmap];0.97[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs6485592	0.81[EUR][1000 genomes]
rs7124466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7929875	0.91[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9667741	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7107896	GYLTL1B	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45124800-45133800	Weak transcription	Right Atrium	heart
2	chr11:45126800-45132400	Enhancers	Fetal Intestine Large	intestine
3	chr11:45128800-45132400	Enhancers	Fetal Brain Male	brain
4	chr11:45132000-45132400	Enhancers	Fetal Muscle Trunk	muscle

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