Variant report

Variant	rs4755948
Chromosome Location	chr11:45232104-45232105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45230472..45232780-chr11:45243145..45245463,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10742744	0.95[EUR][1000 genomes]
rs10742745	0.91[EUR][1000 genomes]
rs1078930	1.00[EUR][1000 genomes]
rs10838426	0.95[EUR][1000 genomes]
rs10838435	0.96[ASN][1000 genomes]
rs11038356	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038361	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281438	0.95[EUR][1000 genomes]
rs2863166	0.80[JPT][hapmap];1.00[ASN][1000 genomes]
rs2863167	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3740783	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3758722	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758728	1.00[EUR][1000 genomes]
rs3781706	0.87[EUR][1000 genomes]
rs6416127	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6416128	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485594	0.95[EUR][1000 genomes]
rs6485595	0.95[EUR][1000 genomes]
rs6485596	0.95[EUR][1000 genomes]
rs6485597	0.95[EUR][1000 genomes]
rs6485598	0.95[EUR][1000 genomes]
rs6485599	1.00[EUR][1000 genomes]
rs6485601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485602	0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs746555	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7937949	0.95[EUR][1000 genomes]
rs7942214	0.87[EUR][1000 genomes]
rs7942347	0.87[EUR][1000 genomes]
rs7945018	1.00[EUR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45202800-45234000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:45203000-45237000	Weak transcription	Small Intestine	intestine
3	chr11:45205800-45238800	Weak transcription	HSMMtube	muscle
4	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:45206600-45251600	Weak transcription	HepG2	liver
7	chr11:45207000-45232400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:45209000-45235200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:45210000-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:45214400-45234800	Weak transcription	A549	lung
13	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:45226400-45234200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:45227000-45234000	Enhancers	Right Atrium	heart
16	chr11:45227400-45241600	Weak transcription	Primary B cells from cord blood	blood
17	chr11:45227400-45242600	Weak transcription	Liver	Liver
18	chr11:45227600-45233400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:45227800-45247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:45228600-45233200	Enhancers	Left Ventricle	heart
21	chr11:45229000-45246600	Weak transcription	Primary T cells from cord blood	blood
22	chr11:45229200-45237400	Genic enhancers	Fetal Muscle Leg	muscle
23	chr11:45229400-45232200	Enhancers	Stomach Mucosa	stomach
24	chr11:45229400-45232400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:45229600-45232600	Genic enhancers	Fetal Intestine Large	intestine
26	chr11:45229600-45232600	Genic enhancers	Fetal Intestine Small	intestine
27	chr11:45229600-45233000	Enhancers	Fetal Heart	heart
28	chr11:45229800-45236800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr11:45230200-45232200	Genic enhancers	Spleen	Spleen
30	chr11:45230200-45232400	Enhancers	H1 Cell Line	embryonic stem cell
31	chr11:45230200-45232800	Enhancers	Psoas Muscle	Psoas
32	chr11:45230200-45233000	Enhancers	Brain Angular Gyrus	brain
33	chr11:45230200-45235800	Strong transcription	Pancreas	Pancrea
34	chr11:45230400-45232200	Enhancers	Placenta	Placenta
35	chr11:45230400-45232400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:45230400-45232600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:45230400-45232600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:45230400-45232800	Enhancers	Ovary	ovary
39	chr11:45230400-45233600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr11:45230400-45234200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:45230600-45232400	Enhancers	Primary hematopoietic stem cells	blood
42	chr11:45230600-45232400	Enhancers	Fetal Kidney	kidney
43	chr11:45230600-45232400	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr11:45230600-45232600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:45230600-45232800	Enhancers	Fetal Brain Male	brain
46	chr11:45230600-45234000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:45230800-45232200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr11:45230800-45232400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:45230800-45232400	Weak transcription	Gastric	stomach
50	chr11:45230800-45233000	Enhancers	Brain Substantia Nigra	brain

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