Variant report

Variant	rs4433590
Chromosome Location	chr11:73310668-73310669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10751226	0.87[EUR][1000 genomes]
rs59806295	0.88[ASN][1000 genomes]
rs61516411	0.88[ASN][1000 genomes]
rs7118057	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7127852	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7930907	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7943721	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73308400-73311000	Active TSS	GM12878-XiMat	blood
2	chr11:73310000-73317600	Weak transcription	Spleen	Spleen
3	chr11:73310200-73310800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:73310400-73311000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:73310400-73311000	Enhancers	HepG2	liver
6	chr11:73310400-73312000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:73310400-73312200	Weak transcription	Psoas Muscle	Psoas
8	chr11:73310400-73313000	Weak transcription	Right Ventricle	heart
9	chr11:73310400-73315800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:73310600-73311000	Enhancers	Dnd41	blood
11	chr11:73310600-73312200	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links