Variant report

Variant	rs59806295
Chromosome Location	chr11:73298498-73298499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73297071..73299471-chr11:73307672..73310016,3	MCF-7	breast:
2	chr11:73287022..73288650-chr11:73298158..73299719,2	MCF-7	breast:
3	chr11:73296523..73298839-chr11:73307777..73311638,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054965	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10501411	0.83[EUR][1000 genomes]
rs11235809	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11820577	0.80[EUR][1000 genomes]
rs11822984	0.80[EUR][1000 genomes]
rs11823913	0.83[ASN][1000 genomes]
rs12276892	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12277924	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12285885	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12290701	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12290785	0.80[EUR][1000 genomes]
rs17132115	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17244616	0.83[EUR][1000 genomes]
rs17310374	0.80[EUR][1000 genomes]
rs4433590	0.88[ASN][1000 genomes]
rs56884659	0.80[EUR][1000 genomes]
rs57491850	0.83[EUR][1000 genomes]
rs58573166	0.96[EUR][1000 genomes]
rs60860405	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61516411	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114376	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123985	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7125598	0.83[ASN][1000 genomes]
rs73546720	0.80[EUR][1000 genomes]
rs73546735	0.80[EUR][1000 genomes]
rs73548680	0.80[EUR][1000 genomes]
rs73548688	0.80[EUR][1000 genomes]
rs73548693	0.83[EUR][1000 genomes]
rs73550316	0.83[EUR][1000 genomes]
rs7927344	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7934218	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7935948	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7938391	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941359	0.83[ASN][1000 genomes]
rs7944346	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7945825	0.83[EUR][1000 genomes]
rs7950375	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv983188	chr11:73273934-73307064	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:73263200-73306000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:73266600-73307800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:73272200-73307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:73275400-73307000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:73276400-73299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:73276400-73307000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:73277200-73299600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:73277400-73307800	Weak transcription	Fetal Intestine Large	intestine
11	chr11:73279400-73307000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:73280000-73299400	Weak transcription	Fetal Stomach	stomach
13	chr11:73281600-73307800	Weak transcription	Hela-S3	cervix
14	chr11:73285200-73303600	Weak transcription	Left Ventricle	heart
15	chr11:73285200-73306600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:73286800-73307600	Weak transcription	Lung	lung
17	chr11:73287800-73306200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:73288000-73306200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:73288400-73307800	Weak transcription	Aorta	Aorta
20	chr11:73288800-73307600	Weak transcription	Fetal Kidney	kidney
21	chr11:73289000-73304800	Weak transcription	Thymus	Thymus
22	chr11:73289000-73305800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:73289200-73299400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:73289200-73300800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:73289200-73304600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:73289200-73304800	Weak transcription	Dnd41	blood
27	chr11:73289400-73299400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:73289400-73304400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:73289400-73307000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:73289600-73306800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:73290000-73304400	Weak transcription	Fetal Lung	lung
32	chr11:73290000-73304800	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:73290000-73306600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:73290000-73308000	Weak transcription	Primary B cells from cord blood	blood
35	chr11:73290200-73299200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:73290200-73299400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:73290200-73303400	Weak transcription	Fetal Thymus	thymus
38	chr11:73290200-73304600	Weak transcription	Brain Germinal Matrix	brain
39	chr11:73290200-73306600	Weak transcription	Brain Angular Gyrus	brain
40	chr11:73290200-73307000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:73290200-73307000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:73290200-73307000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:73290400-73302200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:73290400-73304600	Weak transcription	Fetal Brain Female	brain
45	chr11:73290400-73308000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:73291400-73305200	Weak transcription	Ovary	ovary
47	chr11:73291400-73307600	Weak transcription	Pancreas	Pancrea
48	chr11:73291800-73304200	Weak transcription	Primary T cells from cord blood	blood
49	chr11:73294200-73305200	Weak transcription	Psoas Muscle	Psoas
50	chr11:73294200-73307800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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