Variant report

Variant	rs4439714
Chromosome Location	chr15:92820844-92820845
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:92820740-92820890	GM12870	blood:	n/a	n/a
2	CTCF	chr15:92820813-92821533	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr15:92820740-92820890	GM06990	blood:	n/a	n/a
4	CTCF	chr15:92820720-92820870	NB4	blood:	n/a	n/a
5	CTCF	chr15:92820840-92820990	GM12866	blood:	n/a	n/a
6	CTCF	chr15:92820840-92820990	A549	lung:	n/a	n/a
7	JUND	chr15:92820659-92821006	HepG2	liver:	n/a	n/a
8	CTCF	chr15:92820840-92820990	HFF	foreskin:	n/a	n/a
9	SMC3	chr15:92820766-92821610	SK-N-SH	brain:	n/a	n/a
10	CTCF	chr15:92820820-92820970	GM12869	blood:	n/a	n/a
11	CTCF	chr15:92820800-92821050	GM12878	blood:	n/a	n/a
12	CTCF	chr15:92820700-92820850	GM06990	blood:	n/a	n/a
13	CTCF	chr15:92820833-92821555	A549	lung:	n/a	n/a
14	CTCF	chr15:92820800-92820950	HEK293	kidney:	n/a	n/a
15	RAD21	chr15:92820740-92821592	SK-N-SH	brain:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92820715..92821706-chr15:92923043..92923956,5	MCF-7	breast:
2	chr15:92820396..92821237-chr15:92923055..92923557,2	MCF-7	breast:
3	chr15:92820714..92821615-chr15:92926445..92927465,5	MCF-7	breast:
4	chr15:92640575..92641424-chr15:92820669..92821685,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10162665	0.81[AFR][1000 genomes]
rs12102146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600353	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17520385	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17520399	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17598755	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2127334	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127335	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28549170	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4777675	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777921	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56222259	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56237646	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56371025	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62009280	0.81[ASN][1000 genomes]
rs922530	0.91[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92813200-92822800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:92817200-92821200	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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