Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10779987	0.84[ASN][1000 genomes]
rs11127747	0.88[EUR][1000 genomes]
rs1851918	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1851926	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1851928	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1969433	0.83[ASN][1000 genomes]
rs4389498	0.87[EUR][1000 genomes]
rs4452351	0.89[EUR][1000 genomes]
rs4481177	0.89[EUR][1000 genomes]
rs6548784	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766011	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6778265	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6785385	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790351	0.89[EUR][1000 genomes]
rs6797240	0.84[ASN][1000 genomes]
rs6809792	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809793	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817070	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870954	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9877408	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9968070	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4440144	GBE1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81984000-81990600	Weak transcription	Psoas Muscle	Psoas
2	chr3:81988000-81988400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:81988000-81988400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:81988000-81988800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:81988000-81988800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:81988000-81988800	Enhancers	Adipose Nuclei	Adipose
7	chr3:81988200-81988800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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