Variant report

Variant	rs4440427
Chromosome Location	chr6:71951524-71951525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4340962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4707907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58934568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768779	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5341	chr6:71925073-71956936	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71947000-71955000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71949800-71952000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:71950200-71955000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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