Variant report

Variant	rs4444671
Chromosome Location	chr3:79473774-79473775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10154835	0.81[EUR][1000 genomes]
rs1387665	0.95[ASN][1000 genomes]
rs1387667	0.83[ASN][1000 genomes]
rs28441979	0.84[EUR][1000 genomes]
rs28653275	0.82[EUR][1000 genomes]
rs4493394	0.83[ASN][1000 genomes]
rs4564923	0.82[EUR][1000 genomes]
rs60487146	0.84[EUR][1000 genomes]
rs62257608	0.83[EUR][1000 genomes]
rs62259737	0.81[ASN][1000 genomes]
rs73129039	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7616713	0.84[EUR][1000 genomes]
rs7622888	0.84[EUR][1000 genomes]
rs7628507	0.83[EUR][1000 genomes]
rs7640018	0.83[EUR][1000 genomes]
rs9817158	0.85[EUR][1000 genomes]
rs9877218	0.84[EUR][1000 genomes]
rs9880584	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3381015	chr3:79425678-79545174	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv998248	chr3:79426615-79554963	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834747	chr3:79441211-79591923	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79472600-79474400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:79472600-79475000	Enhancers	HMEC	breast
3	chr3:79472600-79475000	Enhancers	NHEK	skin
4	chr3:79472800-79473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:79473200-79474400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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