Variant report

Variant	rs4493394
Chromosome Location	chr3:79410306-79410307
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12495410	1.00[CHB][hapmap]
rs1387665	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1387667	0.91[CHB][hapmap];0.87[JPT][hapmap];0.99[ASN][1000 genomes]
rs4317060	1.00[CHB][hapmap]
rs4373036	1.00[CHB][hapmap]
rs4444671	0.83[ASN][1000 genomes]
rs4535189	1.00[CHB][hapmap]
rs62259737	0.97[ASN][1000 genomes]
rs6548618	1.00[CHB][hapmap]
rs6803202	1.00[CHB][hapmap]
rs7621871	1.00[CHB][hapmap]
rs7631357	1.00[CHB][hapmap]
rs8179916	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv460730	chr3:79286801-79411014	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590737	chr3:79286801-79411014	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79404000-79411200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:79404200-79411200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:79406200-79410600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:79409400-79411600	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:79410200-79415400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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