Variant report

Variant	rs4445019
Chromosome Location	chr5:108511270-108511271
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11240997	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4475287	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4957570	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4957800	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6594349	0.88[ASN][1000 genomes]
rs6594350	0.88[ASN][1000 genomes]
rs6594357	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6865751	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7715933	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7735422	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108468800-108521800	Weak transcription	Aorta	Aorta
2	chr5:108476000-108519200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
4	chr5:108496000-108532800	Weak transcription	Ovary	ovary
5	chr5:108497800-108517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:108498800-108512600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:108499000-108513200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:108500200-108527000	Weak transcription	HSMMtube	muscle
9	chr5:108501000-108521800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:108502200-108522200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:108503200-108526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:108503600-108526200	Weak transcription	Fetal Heart	heart
13	chr5:108503600-108540400	Weak transcription	Psoas Muscle	Psoas
14	chr5:108504400-108513600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:108505000-108535200	Weak transcription	Pancreas	Pancrea
16	chr5:108506600-108511600	Weak transcription	Esophagus	oesophagus
17	chr5:108506600-108511800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:108507600-108516000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:108509000-108521600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:108509200-108523200	Weak transcription	HSMM	muscle
21	chr5:108510600-108511400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr5:108510600-108521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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