Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FER-5	chr5:108555955-108558658	ucscGeneNc_uc003kor_1

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11240997	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12517902	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12519256	0.80[AMR][1000 genomes]
rs13157564	0.80[AMR][1000 genomes]
rs13179986	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13181049	0.80[AMR][1000 genomes]
rs4445019	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4475287	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4957570	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4957800	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56318800	0.80[AMR][1000 genomes]
rs59383615	0.82[AMR][1000 genomes]
rs6594352	0.85[ASN][1000 genomes]
rs6594357	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6865751	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6875865	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6877385	0.80[AMR][1000 genomes]
rs6882037	0.80[AMR][1000 genomes]
rs6882846	0.87[ASN][1000 genomes]
rs6888581	0.80[AMR][1000 genomes]
rs7708636	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7730149	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7735422	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv981011	chr5:108556807-108562767	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108555200-108559600	Weak transcription	Ovary	ovary
2	chr5:108555400-108559400	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:108555400-108559400	Weak transcription	Pancreas	Pancrea
4	chr5:108555800-108558200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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