Variant report

Variant	nsv981011
Chromosome Location	chr5:108556807-108562767
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FER-5	chr5:108555955-108558658	ucscGeneNc_uc003kor_1

Extended variants
information (count: 280 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:280 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs150660208	chr5:108556808-108556809	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs182136413	chr5:108556820-108556821	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs530764061	chr5:108556826-108556827	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs386690970	chr5:108556877-108556878	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs7715933	chr5:108556878-108556879	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs573873590	chr5:108556893-108556894	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs78707264	chr5:108556901-108556902	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs566612862	chr5:108556938-108556939	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs538736245	chr5:108556939-108556940	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs377650230	chr5:108556964-108556965	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs552256814	chr5:108556977-108556978	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs149373597	chr5:108557059-108557060	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs537406607	chr5:108557104-108557105	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs552142062	chr5:108557123-108557124	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs187648149	chr5:108557143-108557144	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs571953197	chr5:108557146-108557147	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs190575618	chr5:108557147-108557148	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs142866291	chr5:108557150-108557151	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs549420157	chr5:108557193-108557194	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs372682297	chr5:108557194-108557195	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs375071688	chr5:108557203-108557204	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs536882443	chr5:108557245-108557246	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs144695218	chr5:108557276-108557277	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs573047987	chr5:108557279-108557280	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs62376814	chr5:108557284-108557285	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs148507992	chr5:108557292-108557293	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs373849515	chr5:108557347-108557348	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs145326690	chr5:108557355-108557356	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs544259028	chr5:108557360-108557361	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs11744242	chr5:108557405-108557406	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs183138127	chr5:108557418-108557419	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs540482584	chr5:108557461-108557462	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs560394820	chr5:108557467-108557468	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs187066175	chr5:108557469-108557470	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs560284644	chr5:108557473-108557474	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs552319277	chr5:108557510-108557511	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs535075808	chr5:108557559-108557560	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs577378102	chr5:108557567-108557568	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs568944049	chr5:108557588-108557589	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs34497936	chr5:108557617-108557618	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs190315415	chr5:108557631-108557632	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs547859275	chr5:108557635-108557636	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs116854474	chr5:108557640-108557641	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs536542160	chr5:108557653-108557654	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs553203131	chr5:108557691-108557692	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs572444933	chr5:108557756-108557757	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs540141184	chr5:108557759-108557760	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs561994514	chr5:108557802-108557803	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs543594224	chr5:108557810-108557811	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs182130561	chr5:108557860-108557861	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ovarian cancer	21720365	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	21509527	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Lung cancer	16773561	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108555200-108559600	Weak transcription	Ovary	ovary
2	chr5:108555400-108559400	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:108555400-108559400	Weak transcription	Pancreas	Pancrea
4	chr5:108555800-108558200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:108558200-108558400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:108558400-108559400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:108559000-108559400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:108559200-108559400	Bivalent Enhancer	HepG2	liver
9	chr5:108559200-108559600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:108559200-108559600	Enhancers	Fetal Muscle Trunk	muscle
11	chr5:108559200-108559800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:108559400-108559600	Enhancers	Fetal Muscle Leg	muscle
13	chr5:108559400-108559600	ZNF genes & repeats	Pancreas	Pancrea
14	chr5:108559400-108559600	Bivalent/Poised TSS	HepG2	liver
15	chr5:108559400-108560000	Enhancers	Fetal Stomach	stomach
16	chr5:108559400-108560200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:108559400-108560400	Enhancers	Fetal Lung	lung
18	chr5:108559600-108561800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:108559600-108562600	Enhancers	Ovary	ovary
20	chr5:108560000-108561200	Weak transcription	Fetal Stomach	stomach
21	chr5:108560400-108561200	Weak transcription	Fetal Lung	lung
22	chr5:108561200-108561400	Enhancers	Fetal Lung	lung
23	chr5:108561200-108561600	Enhancers	Fetal Stomach	stomach
24	chr5:108561400-108562600	Enhancers	Fetal Muscle Leg	muscle
25	chr5:108561600-108564400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr5:108561800-108562600	Enhancers	Fetal Muscle Trunk	muscle
27	chr5:108562000-108562400	Enhancers	Fetal Brain Male	brain
28	chr5:108562000-108562600	Enhancers	Fetal Brain Female	brain

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