Variant report

Variant	rs11744242
Chromosome Location	chr5:108557405-108557406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11240996	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11240998	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11240999	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11738705	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13181682	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13185072	0.82[ASN][1000 genomes]
rs4458628	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4493714	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4501376	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4569919	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6875151	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6889791	0.86[EUR][1000 genomes]
rs7710223	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7735737	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7735884	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv981011	chr5:108556807-108562767	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108555200-108559600	Weak transcription	Ovary	ovary
2	chr5:108555400-108559400	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:108555400-108559400	Weak transcription	Pancreas	Pancrea
4	chr5:108555800-108558200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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