Variant report

Variant	rs11240996
Chromosome Location	chr5:108558126-108558127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FER-5	chr5:108555955-108558658	ucscGeneNc_uc003kor_1

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10900654	0.84[ASN][1000 genomes]
rs11240993	0.84[ASN][1000 genomes]
rs11240994	0.84[ASN][1000 genomes]
rs11240995	0.84[ASN][1000 genomes]
rs11240998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11240999	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11744242	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12519222	0.86[ASN][1000 genomes]
rs12519256	0.85[ASN][1000 genomes]
rs12521907	0.86[ASN][1000 genomes]
rs13157564	0.88[ASN][1000 genomes]
rs13159083	0.84[ASN][1000 genomes]
rs13163803	0.84[ASN][1000 genomes]
rs13176379	0.84[ASN][1000 genomes]
rs13181049	0.87[ASN][1000 genomes]
rs13181682	0.83[EUR][1000 genomes]
rs4320311	0.84[ASN][1000 genomes]
rs4342372	0.82[ASN][1000 genomes]
rs4367335	0.84[ASN][1000 genomes]
rs4409140	0.84[ASN][1000 genomes]
rs4458628	0.87[EUR][1000 genomes]
rs4463211	0.84[ASN][1000 genomes]
rs4493714	0.82[EUR][1000 genomes]
rs4569919	0.87[EUR][1000 genomes]
rs4645373	0.84[ASN][1000 genomes]
rs56318800	0.88[ASN][1000 genomes]
rs58026852	0.89[ASN][1000 genomes]
rs59383615	0.86[ASN][1000 genomes]
rs60461520	0.89[ASN][1000 genomes]
rs61370545	0.84[ASN][1000 genomes]
rs62376809	0.86[ASN][1000 genomes]
rs6594356	0.84[ASN][1000 genomes]
rs6594358	0.82[ASN][1000 genomes]
rs6863496	0.87[ASN][1000 genomes]
rs6875151	0.87[EUR][1000 genomes]
rs6877385	0.88[ASN][1000 genomes]
rs6882037	0.88[ASN][1000 genomes]
rs6888581	0.90[ASN][1000 genomes]
rs6891602	0.83[ASN][1000 genomes]
rs6895606	0.81[ASN][1000 genomes]
rs6895876	0.84[ASN][1000 genomes]
rs7710223	0.86[EUR][1000 genomes]
rs7719087	0.84[ASN][1000 genomes]
rs7719276	0.84[ASN][1000 genomes]
rs7719474	0.84[ASN][1000 genomes]
rs7719604	0.84[ASN][1000 genomes]
rs7735737	0.82[EUR][1000 genomes]
rs7735884	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv981011	chr5:108556807-108562767	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108555200-108559600	Weak transcription	Ovary	ovary
2	chr5:108555400-108559400	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:108555400-108559400	Weak transcription	Pancreas	Pancrea
4	chr5:108555800-108558200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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