Variant report

Variant	rs11240999
Chromosome Location	chr5:108558520-108558521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11240996	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11240998	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11738705	0.92[CEU][hapmap];0.93[LWK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs11744242	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13181682	0.93[EUR][1000 genomes]
rs4446517	0.91[YRI][hapmap]
rs4458628	0.86[EUR][1000 genomes]
rs4493714	0.91[EUR][1000 genomes]
rs4501376	0.84[EUR][1000 genomes]
rs4569919	0.86[EUR][1000 genomes]
rs6875151	0.97[EUR][1000 genomes]
rs6889791	0.85[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs7710223	0.96[EUR][1000 genomes]
rs7735737	0.91[EUR][1000 genomes]
rs7735884	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv981011	chr5:108556807-108562767	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108555200-108559600	Weak transcription	Ovary	ovary
2	chr5:108555400-108559400	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:108555400-108559400	Weak transcription	Pancreas	Pancrea
4	chr5:108558400-108559400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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