Variant report

Variant	rs11738705
Chromosome Location	chr5:108528729-108528730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAN2A1-6	chr5:108528056-108530759	NONHSAT103133

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11240999	0.87[EUR][1000 genomes]
rs11744242	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13181682	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4446517	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs4458628	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4493714	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4501376	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4569919	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6875151	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6889791	0.82[CEU][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs7707660	0.81[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7710223	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7735737	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7735884	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1792067	chr5:108521224-108542526	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
2	chr5:108496000-108532800	Weak transcription	Ovary	ovary
3	chr5:108503600-108540400	Weak transcription	Psoas Muscle	Psoas
4	chr5:108505000-108535200	Weak transcription	Pancreas	Pancrea
5	chr5:108513800-108529600	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:108517200-108533000	Weak transcription	Fetal Kidney	kidney
7	chr5:108520600-108530400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:108522200-108529400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:108522600-108538000	Weak transcription	Aorta	Aorta
10	chr5:108523800-108529600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:108523800-108531600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:108524000-108531200	Weak transcription	Primary T cells from cord blood	blood
13	chr5:108524000-108531800	Weak transcription	Fetal Stomach	stomach
14	chr5:108524600-108532400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:108524800-108530800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:108524800-108533600	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:108524800-108535200	Weak transcription	Fetal Brain Male	brain
18	chr5:108525000-108531800	Weak transcription	Fetal Lung	lung
19	chr5:108525000-108532000	Weak transcription	Brain Substantia Nigra	brain
20	chr5:108525200-108532000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:108525200-108535200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:108526000-108528800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:108526200-108528800	Enhancers	Hela-S3	cervix
24	chr5:108526400-108530000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:108526400-108531600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr5:108526400-108532200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr5:108526600-108531600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr5:108526800-108531200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr5:108526800-108533200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr5:108527000-108528800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:108527000-108532400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:108527200-108531800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr5:108527200-108534600	Weak transcription	HSMM	muscle
34	chr5:108527400-108532000	Weak transcription	NHDF-Ad	bronchial
35	chr5:108527400-108534800	Weak transcription	HMEC	breast
36	chr5:108527400-108535000	Weak transcription	HSMMtube	muscle
37	chr5:108527600-108529400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr5:108527600-108530600	Enhancers	Fetal Intestine Small	intestine
39	chr5:108527600-108531200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr5:108527600-108532000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr5:108527800-108528800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr5:108527800-108529200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr5:108527800-108529400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:108527800-108530200	Enhancers	Fetal Intestine Large	intestine
45	chr5:108527800-108530400	Enhancers	H1 Cell Line	embryonic stem cell
46	chr5:108527800-108531800	Weak transcription	NHEK	skin
47	chr5:108527800-108542800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:108528000-108529800	Weak transcription	Adipose Nuclei	Adipose
49	chr5:108528000-108531000	Weak transcription	K562	blood
50	chr5:108528000-108531600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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