Variant report

Variant	rs4446420
Chromosome Location	chr5:54143605-54143606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10039924	0.80[AMR][1000 genomes]
rs10042288	0.85[EUR][1000 genomes]
rs10042495	0.85[EUR][1000 genomes]
rs10042734	0.88[EUR][1000 genomes]
rs10045790	0.80[AMR][1000 genomes]
rs10050561	0.80[AMR][1000 genomes]
rs10056452	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10058862	0.88[EUR][1000 genomes]
rs10434559	0.80[AMR][1000 genomes]
rs10805469	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10805470	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10940431	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10940432	0.83[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10940434	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11738151	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11742711	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12515327	0.91[EUR][1000 genomes]
rs12657845	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13186826	0.81[AMR][1000 genomes]
rs1560165	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1560166	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17588816	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1965716	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1988528	0.87[ASN][1000 genomes]
rs1991498	0.92[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs2017082	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2017318	0.87[ASN][1000 genomes]
rs2017540	0.87[ASN][1000 genomes]
rs2019005	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2195392	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2195393	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2407758	0.85[ASN][1000 genomes]
rs28564901	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2897758	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3916738	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3935813	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4074332	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4242047	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4315891	0.99[ASN][1000 genomes]
rs4373237	0.99[ASN][1000 genomes]
rs4407587	0.99[ASN][1000 genomes]
rs4502767	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4865586	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4865587	1.00[ASN][1000 genomes]
rs4865879	0.86[EUR][1000 genomes]
rs4865880	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4865882	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4865883	0.87[ASN][1000 genomes]
rs6860824	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6863705	0.92[CEU][hapmap]
rs6891667	0.90[ASN][1000 genomes]
rs6893903	0.86[ASN][1000 genomes]
rs734097	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs737526	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7448996	0.90[ASN][1000 genomes]
rs7708368	0.96[ASN][1000 genomes]
rs7709516	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7734613	0.88[ASN][1000 genomes]
rs976645	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs981978	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54141600-54146400	Weak transcription	Hela-S3	cervix
2	chr5:54141800-54144600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:54141800-54147200	Weak transcription	HMEC	breast
4	chr5:54142000-54144200	Weak transcription	HSMM	muscle

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