Variant report

Variant	rs4865587
Chromosome Location	chr5:54145025-54145026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:53811747..53814242-chr5:54144763..54147305,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178996	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10036257	0.81[EUR][1000 genomes]
rs10042394	0.85[EUR][1000 genomes]
rs10045175	0.81[EUR][1000 genomes]
rs10045765	0.85[EUR][1000 genomes]
rs10057871	0.85[EUR][1000 genomes]
rs10058571	0.81[EUR][1000 genomes]
rs10066622	0.81[EUR][1000 genomes]
rs10471923	0.81[EUR][1000 genomes]
rs1073709	0.85[EUR][1000 genomes]
rs10737956	0.81[EUR][1000 genomes]
rs10805463	0.81[EUR][1000 genomes]
rs10940428	0.81[EUR][1000 genomes]
rs12514244	0.83[EUR][1000 genomes]
rs12522199	0.85[EUR][1000 genomes]
rs13155441	0.81[EUR][1000 genomes]
rs13167527	0.83[EUR][1000 genomes]
rs13180287	0.81[EUR][1000 genomes]
rs13181749	0.80[EUR][1000 genomes]
rs1965716	0.87[ASN][1000 genomes]
rs1988528	0.87[ASN][1000 genomes]
rs1991498	0.90[ASN][1000 genomes]
rs2017318	0.87[ASN][1000 genomes]
rs2017540	0.87[ASN][1000 genomes]
rs2407758	0.85[ASN][1000 genomes]
rs2897758	0.84[ASN][1000 genomes]
rs3935813	0.90[ASN][1000 genomes]
rs4074332	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4242045	0.81[EUR][1000 genomes]
rs4242048	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4290968	0.81[EUR][1000 genomes]
rs4315891	0.99[ASN][1000 genomes]
rs4336310	0.81[EUR][1000 genomes]
rs4362906	0.85[EUR][1000 genomes]
rs4373237	0.99[ASN][1000 genomes]
rs4407587	0.99[ASN][1000 genomes]
rs4446420	1.00[ASN][1000 genomes]
rs4451013	0.85[EUR][1000 genomes]
rs4457032	0.81[EUR][1000 genomes]
rs4519880	0.81[EUR][1000 genomes]
rs4591702	0.85[EUR][1000 genomes]
rs4610422	0.85[EUR][1000 genomes]
rs4865586	1.00[ASN][1000 genomes]
rs4865873	0.81[EUR][1000 genomes]
rs4865874	0.81[EUR][1000 genomes]
rs4865875	0.85[EUR][1000 genomes]
rs4865883	0.87[ASN][1000 genomes]
rs6450251	0.81[EUR][1000 genomes]
rs6450252	0.81[EUR][1000 genomes]
rs6860824	0.89[ASN][1000 genomes]
rs6891667	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6893903	0.86[ASN][1000 genomes]
rs734097	0.85[ASN][1000 genomes]
rs7446423	0.85[EUR][1000 genomes]
rs7448996	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7708368	0.96[ASN][1000 genomes]
rs7728303	0.81[EUR][1000 genomes]
rs7734613	0.88[ASN][1000 genomes]
rs9292074	0.85[EUR][1000 genomes]
rs976645	0.83[ASN][1000 genomes]
rs981978	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54141600-54146400	Weak transcription	Hela-S3	cervix
2	chr5:54141800-54147200	Weak transcription	HMEC	breast

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