Variant report

Variant	rs4449073
Chromosome Location	chr2:212146487-212146488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10171472	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10183762	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13428730	0.83[ASN][1000 genomes]
rs17691926	0.96[ASN][1000 genomes]
rs17692845	0.92[ASN][1000 genomes]
rs4287713	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4471829	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834522	chr2:212066442-212225328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212144800-212147000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:212145000-212146600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:212145200-212146600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:212146000-212146600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:212146200-212146600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:212146200-212146600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:212146200-212146600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:212146200-212146600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:212146200-212146600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:212146200-212146600	Enhancers	Fetal Heart	heart
11	chr2:212146200-212147000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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