Variant report

Variant	rs4449614
Chromosome Location	chr6:24142929-24142930
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11751907	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs12215160	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16888748	0.86[EUR][1000 genomes]
rs3747781	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4607425	0.83[CHB][hapmap]
rs60661883	0.90[EUR][1000 genomes]
rs6937665	0.82[CEU][hapmap]
rs6938529	0.82[CEU][hapmap]
rs9356929	0.86[EUR][1000 genomes]
rs9358752	0.90[EUR][1000 genomes]
rs9393533	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs9393534	0.87[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24127600-24146800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:24140600-24145600	Weak transcription	HepG2	liver
3	chr6:24141600-24145800	Weak transcription	Brain Anterior Caudate	brain
4	chr6:24141800-24144200	Weak transcription	Fetal Brain Female	brain
5	chr6:24142000-24145600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:24142000-24145800	Weak transcription	Brain Angular Gyrus	brain
7	chr6:24142000-24145800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:24142000-24148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:24142000-24149800	Weak transcription	Fetal Brain Male	brain
10	chr6:24142200-24145600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:24142200-24147800	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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