Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10946679	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs11751907	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11969397	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12215160	0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs13208582	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16888748	0.91[ASN][1000 genomes]
rs1936389	0.84[ASN][1000 genomes]
rs3789219	0.85[ASN][1000 genomes]
rs3804320	0.84[ASN][1000 genomes]
rs4449614	0.83[CHB][hapmap]
rs4712804	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs60661883	0.95[ASN][1000 genomes]
rs62400343	0.92[ASN][1000 genomes]
rs6456593	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6456594	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6937665	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6938529	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9356929	0.92[ASN][1000 genomes]
rs9358752	0.96[ASN][1000 genomes]
rs9358753	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9379646	0.96[ASN][1000 genomes]
rs9393532	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9393533	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9393534	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1798372	chr6:24158542-24181477	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24153800-24200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: