Variant report

Variant	rs4450199
Chromosome Location	chr12:60621559-60621560
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60617591..60619683-chr12:60621297..60623226,2	MCF-7	breast:
2	chr12:60602868..60604477-chr12:60621320..60623690,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10506409	0.81[AFR][1000 genomes]
rs10747867	0.86[AFR][1000 genomes]
rs10747868	0.86[AFR][1000 genomes]
rs10784035	0.86[AFR][1000 genomes]
rs10784036	0.86[AFR][1000 genomes]
rs10784037	0.89[AFR][1000 genomes]
rs10784038	0.89[AFR][1000 genomes]
rs10784039	0.89[AFR][1000 genomes]
rs10877404	0.86[AFR][1000 genomes]
rs10877405	0.87[AFR][1000 genomes]
rs10877407	0.89[AFR][1000 genomes]
rs10877408	0.89[AFR][1000 genomes]
rs11173382	0.81[AFR][1000 genomes]
rs1389250	0.84[AFR][1000 genomes]
rs1389257	0.84[AFR][1000 genomes]
rs1493310	0.86[AFR][1000 genomes]
rs1493317	0.84[AFR][1000 genomes]
rs1493319	0.82[AFR][1000 genomes]
rs1493321	0.82[AFR][1000 genomes]
rs1493322	0.84[AFR][1000 genomes]
rs1493324	0.84[AFR][1000 genomes]
rs1546345	0.81[AFR][1000 genomes]
rs1580659	0.84[AFR][1000 genomes]
rs2886000	0.82[AFR][1000 genomes]
rs4298941	0.88[AFR][1000 genomes]
rs4329723	0.89[AFR][1000 genomes]
rs4335582	0.82[AFR][1000 genomes]
rs4378430	0.86[AFR][1000 genomes]
rs4384408	0.88[AFR][1000 genomes]
rs4417317	0.86[AFR][1000 genomes]
rs4444112	0.89[AFR][1000 genomes]
rs4444113	0.89[AFR][1000 genomes]
rs4459343	0.87[AFR][1000 genomes]
rs4499037	0.88[AFR][1000 genomes]
rs4567506	0.89[AFR][1000 genomes]
rs4573715	0.89[AFR][1000 genomes]
rs4758748	0.88[AFR][1000 genomes]
rs4758749	0.80[AFR][1000 genomes]
rs4758856	0.82[AFR][1000 genomes]
rs4758857	0.83[AFR][1000 genomes]
rs6581298	0.84[AFR][1000 genomes]
rs6581302	0.89[AFR][1000 genomes]
rs6581306	0.89[AFR][1000 genomes]
rs6581307	0.89[AFR][1000 genomes]
rs6581309	0.81[AFR][1000 genomes]
rs7132272	0.86[AFR][1000 genomes]
rs7132358	0.89[AFR][1000 genomes]
rs7132591	0.84[AFR][1000 genomes]
rs7136169	0.84[AFR][1000 genomes]
rs7138272	0.84[AFR][1000 genomes]
rs7296160	0.81[AFR][1000 genomes]
rs7298962	0.87[AFR][1000 genomes]
rs7301861	0.81[AFR][1000 genomes]
rs7303750	0.81[AFR][1000 genomes]
rs7304826	0.81[AFR][1000 genomes]
rs7307413	0.81[AFR][1000 genomes]
rs7953100	0.88[AFR][1000 genomes]
rs7956125	0.89[AFR][1000 genomes]
rs7957393	0.88[AFR][1000 genomes]
rs7958344	0.86[AFR][1000 genomes]
rs7960579	0.89[AFR][1000 genomes]
rs7962272	0.87[AFR][1000 genomes]
rs7963402	0.87[AFR][1000 genomes]
rs7971049	0.89[AFR][1000 genomes]
rs7971364	0.84[AFR][1000 genomes]
rs7976780	0.89[AFR][1000 genomes]
rs7977625	0.89[AFR][1000 genomes]
rs7980140	0.86[AFR][1000 genomes]
rs970975	0.80[AFR][1000 genomes]
rs973417	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754064	chr12:60608389-60645117	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60599600-60645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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