Variant report

Variant	rs4461793
Chromosome Location	chr7:12200573-12200574
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12193169..12195612-chr7:12198878..12201480,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10231661	0.89[ASN][1000 genomes]
rs10247705	0.88[ASN][1000 genomes]
rs10250589	0.86[EUR][1000 genomes]
rs10276956	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972304	0.85[EUR][1000 genomes]
rs11977061	0.86[EUR][1000 genomes]
rs11977091	0.86[EUR][1000 genomes]
rs11977861	0.86[EUR][1000 genomes]
rs11977937	0.86[EUR][1000 genomes]
rs11980606	0.86[EUR][1000 genomes]
rs11981447	0.84[EUR][1000 genomes]
rs11981449	0.86[EUR][1000 genomes]
rs11982722	0.85[EUR][1000 genomes]
rs1435538	0.86[ASN][1000 genomes]
rs1435539	0.94[ASN][1000 genomes]
rs1435542	0.86[EUR][1000 genomes]
rs17594282	0.91[ASN][1000 genomes]
rs17594331	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17664359	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2058641	0.85[EUR][1000 genomes]
rs2060483	0.86[ASN][1000 genomes]
rs2193490	0.86[ASN][1000 genomes]
rs2193491	0.85[ASN][1000 genomes]
rs4281019	0.91[ASN][1000 genomes]
rs4314556	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4719297	0.85[EUR][1000 genomes]
rs4721043	0.82[EUR][1000 genomes]
rs4721045	0.86[EUR][1000 genomes]
rs4721046	0.86[EUR][1000 genomes]
rs4721047	0.86[EUR][1000 genomes]
rs4721050	0.91[ASN][1000 genomes]
rs6460886	0.97[EUR][1000 genomes]
rs6955418	0.86[EUR][1000 genomes]
rs6955600	0.86[EUR][1000 genomes]
rs6963608	0.94[ASN][1000 genomes]
rs6973620	0.86[ASN][1000 genomes]
rs6973758	0.86[ASN][1000 genomes]
rs7776839	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7787454	0.84[EUR][1000 genomes]
rs7789966	0.81[ASN][1000 genomes]
rs7793474	0.86[EUR][1000 genomes]
rs7793917	0.86[EUR][1000 genomes]
rs7798934	0.84[ASN][1000 genomes]
rs7801462	0.84[ASN][1000 genomes]
rs7810945	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv887627	chr7:12178793-12227892	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv887628	chr7:12186502-12227892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12198600-12201000	Weak transcription	NH-A	brain
2	chr7:12198600-12201600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:12198600-12208200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:12199000-12201200	Weak transcription	A549	lung
5	chr7:12200400-12200800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links