Variant report

Variant	rs7776839
Chromosome Location	chr7:12211464-12211465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10231661	0.84[ASN][1000 genomes]
rs10247705	0.84[ASN][1000 genomes]
rs10250589	0.85[EUR][1000 genomes]
rs10276956	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11972304	0.85[EUR][1000 genomes]
rs11977061	0.85[EUR][1000 genomes]
rs11977091	0.85[EUR][1000 genomes]
rs11977861	0.85[EUR][1000 genomes]
rs11977937	0.86[EUR][1000 genomes]
rs11980606	0.85[EUR][1000 genomes]
rs11981447	0.83[EUR][1000 genomes]
rs11981449	0.85[EUR][1000 genomes]
rs11982722	0.85[EUR][1000 genomes]
rs1435537	0.86[ASN][1000 genomes]
rs1435538	0.81[ASN][1000 genomes]
rs1435539	0.89[ASN][1000 genomes]
rs1435542	0.85[EUR][1000 genomes]
rs17594282	0.81[ASN][1000 genomes]
rs17594331	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17664359	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2058641	0.85[EUR][1000 genomes]
rs2060483	0.86[ASN][1000 genomes]
rs2117722	0.83[ASN][1000 genomes]
rs2193490	0.86[ASN][1000 genomes]
rs2193491	0.80[ASN][1000 genomes]
rs4281019	0.81[ASN][1000 genomes]
rs4314556	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4461793	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4719297	0.85[EUR][1000 genomes]
rs4721043	0.82[EUR][1000 genomes]
rs4721045	0.86[EUR][1000 genomes]
rs4721046	0.86[EUR][1000 genomes]
rs4721047	0.86[EUR][1000 genomes]
rs4721050	0.86[ASN][1000 genomes]
rs6460886	0.95[EUR][1000 genomes]
rs6955418	0.85[EUR][1000 genomes]
rs6955600	0.85[EUR][1000 genomes]
rs6963608	0.89[ASN][1000 genomes]
rs6973620	0.86[ASN][1000 genomes]
rs6973758	0.86[ASN][1000 genomes]
rs7787454	0.84[EUR][1000 genomes]
rs7789966	0.91[ASN][1000 genomes]
rs7793474	0.85[EUR][1000 genomes]
rs7793917	0.85[EUR][1000 genomes]
rs7798934	0.88[ASN][1000 genomes]
rs7799366	0.82[ASN][1000 genomes]
rs7810945	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv534432	chr7:12148960-12693032	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1021710	chr7:12164993-12251790	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv887627	chr7:12178793-12227892	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv887628	chr7:12186502-12227892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12209200-12212000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:12209400-12211800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr7:12209400-12211800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr7:12210200-12211800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:12210200-12212000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:12210400-12211600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr7:12211200-12211600	Enhancers	A549	lung
8	chr7:12211400-12212200	Enhancers	HepG2	liver
9	chr7:12211400-12212800	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links