Variant report

Variant	rs4466275
Chromosome Location	chr6:114338625-114338626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17075809	0.84[EUR][1000 genomes]
rs4324801	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945511	0.83[ASN][1000 genomes]
rs6568825	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6916426	0.81[AFR][1000 genomes]
rs6924176	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747625	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114329200-114342200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:114333000-114339200	Weak transcription	Stomach Mucosa	stomach
3	chr6:114336800-114338800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:114337400-114339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:114337800-114339800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:114338000-114338800	Enhancers	Fetal Muscle Leg	muscle
7	chr6:114338000-114338800	Enhancers	NH-A	brain
8	chr6:114338000-114339400	Enhancers	Placenta	Placenta
9	chr6:114338000-114339600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:114338000-114339800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:114338200-114338800	Flanking Active TSS	HSMMtube	muscle
12	chr6:114338200-114339000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr6:114338200-114339000	Enhancers	HMEC	breast
14	chr6:114338200-114339600	Enhancers	NHEK	skin
15	chr6:114338600-114338800	Flanking Active TSS	HSMM	muscle
16	chr6:114338600-114352200	Weak transcription	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links