Variant report

Variant	rs6568825
Chromosome Location	chr6:114329024-114329025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17075707	0.82[ASN][1000 genomes]
rs2499617	0.88[ASN][1000 genomes]
rs2615524	0.88[ASN][1000 genomes]
rs2810164	0.88[ASN][1000 genomes]
rs2810165	0.88[ASN][1000 genomes]
rs352091	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs352097	1.00[JPT][hapmap]
rs4324801	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4466275	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4945990	1.00[CHB][hapmap]
rs531436	0.88[ASN][1000 genomes]
rs538681	0.88[ASN][1000 genomes]
rs6924176	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114311800-114332400	Weak transcription	Fetal Brain Female	brain
2	chr6:114314600-114331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:114318800-114331600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:114322000-114330400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:114322800-114329200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:114328200-114329400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:114328200-114329400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:114328200-114329400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:114328200-114329600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:114328200-114329600	Genic enhancers	HSMMtube	muscle
11	chr6:114328200-114329800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:114328200-114329800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:114328200-114329800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:114328200-114329800	Enhancers	Dnd41	blood
15	chr6:114328200-114329800	Enhancers	HSMM	muscle
16	chr6:114328200-114330600	Enhancers	HUVEC	blood vessel
17	chr6:114328200-114333000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:114328200-114333200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:114328400-114329200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr6:114328400-114329200	Enhancers	Brain Anterior Caudate	brain
21	chr6:114328400-114329200	Enhancers	Brain Substantia Nigra	brain
22	chr6:114328400-114329400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:114328400-114329600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:114328400-114329800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:114328400-114330800	Enhancers	Brain Angular Gyrus	brain
26	chr6:114328400-114331400	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr6:114328400-114332600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:114328400-114332800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:114328600-114329200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:114328600-114329800	Enhancers	NH-A	brain
31	chr6:114328600-114330000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:114328600-114330400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr6:114328800-114329200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr6:114328800-114329200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:114328800-114329200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr6:114328800-114329200	Enhancers	Primary T cells fromperipheralblood	blood
37	chr6:114328800-114329200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr6:114328800-114329200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr6:114328800-114329200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:114328800-114329200	Enhancers	Fetal Thymus	thymus
41	chr6:114328800-114329200	Enhancers	NHDF-Ad	bronchial
42	chr6:114328800-114329400	Enhancers	Brain Hippocampus Middle	brain
43	chr6:114328800-114329600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:114328800-114329800	Enhancers	Placenta	Placenta
45	chr6:114329000-114329200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr6:114329000-114329200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:114329000-114329200	Enhancers	Lung	lung
48	chr6:114329000-114329800	Enhancers	Osteobl	bone

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