Variant report

Variant	rs4467886
Chromosome Location	chr7:137149525-137149526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4585690	1.00[AMR][1000 genomes]
rs56704414	1.00[AMR][1000 genomes]
rs58999229	1.00[AMR][1000 genomes]
rs73444503	1.00[AMR][1000 genomes]
rs73444506	1.00[AMR][1000 genomes]
rs73455326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137139000-137150800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:137139800-137149600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
4	chr7:137140000-137152600	Weak transcription	Fetal Brain Male	brain
5	chr7:137147000-137150600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:137147600-137151200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:137147600-137152400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:137147800-137152000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:137147800-137160600	Weak transcription	NH-A	brain
10	chr7:137148000-137149600	Strong transcription	Muscle Satellite Cultured Cells	--
11	chr7:137148000-137149600	Strong transcription	Osteobl	bone
12	chr7:137148000-137160400	Weak transcription	Brain Anterior Caudate	brain
13	chr7:137148200-137149800	Weak transcription	Adipose Nuclei	Adipose
14	chr7:137148200-137161800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:137148400-137151000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:137148400-137160400	Weak transcription	HSMMtube	muscle
17	chr7:137148400-137160800	Weak transcription	HSMM	muscle
18	chr7:137148600-137206400	Weak transcription	Aorta	Aorta
19	chr7:137149200-137149600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:137149400-137150600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:137149400-137152600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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