Variant report

Variant	rs58999229
Chromosome Location	chr7:137144727-137144728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4467886	1.00[AMR][1000 genomes]
rs4585690	1.00[AMR][1000 genomes]
rs56704414	1.00[AMR][1000 genomes]
rs73444503	1.00[AMR][1000 genomes]
rs73444506	1.00[AMR][1000 genomes]
rs73455326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137125000-137147600	Weak transcription	Aorta	Aorta
2	chr7:137139000-137150800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:137139400-137147600	Weak transcription	Adipose Nuclei	Adipose
4	chr7:137139800-137149600	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:137139800-137165000	Weak transcription	Fetal Brain Female	brain
6	chr7:137140000-137147200	Weak transcription	HSMM	muscle
7	chr7:137140000-137147400	Weak transcription	HSMMtube	muscle
8	chr7:137140000-137152600	Weak transcription	Fetal Brain Male	brain
9	chr7:137140200-137146000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:137140200-137146400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:137140200-137146400	Weak transcription	NH-A	brain
12	chr7:137140200-137146400	Weak transcription	NHDF-Ad	bronchial
13	chr7:137140400-137146400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:137140400-137146800	Weak transcription	Osteobl	bone
15	chr7:137140800-137145800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:137143200-137145400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:137143600-137147200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:137144200-137146400	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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