Variant report

Variant	rs4472961
Chromosome Location	chr11:76026409-76026410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11236727	1.00[EUR][1000 genomes]
rs11236744	1.00[EUR][1000 genomes]
rs17134803	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72477736	1.00[EUR][1000 genomes]
rs736983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76024400-76027000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr11:76024800-76026800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:76025000-76026600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:76025000-76026800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:76025000-76027000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:76025000-76027000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:76025200-76026800	Enhancers	HMEC	breast
8	chr11:76025200-76026800	Enhancers	NHEK	skin
9	chr11:76025400-76026600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:76025400-76027000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:76025400-76029800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:76025800-76028400	Weak transcription	Hela-S3	cervix
13	chr11:76025800-76029200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:76025800-76031200	Weak transcription	Placenta	Placenta
15	chr11:76026000-76028400	Weak transcription	Adipose Nuclei	Adipose
16	chr11:76026200-76026800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:76026200-76029400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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