Variant report

Variant	rs4474633
Chromosome Location	chr15:49260601-49260602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11070672	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631087	0.86[GIH][hapmap]
rs12324356	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12906122	0.91[CHB][hapmap]
rs12915926	0.82[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4474633	SECISBP2L	cis	cerebellum	SCAN
rs4474633	SLC27A2	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49256400-49266800	Weak transcription	Brain Substantia Nigra	brain
2	chr15:49256400-49267200	Weak transcription	Aorta	Aorta
3	chr15:49256800-49265200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:49259400-49265200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:49259600-49261800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:49259600-49262800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:49259600-49263000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr15:49259600-49263000	Weak transcription	NHDF-Ad	bronchial
9	chr15:49259600-49267400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:49259800-49260800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:49260200-49263000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:49260200-49267800	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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