Variant report

Variant	rs4485360
Chromosome Location	chr16:81956927-81956928
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:81956294-81957372	GM12878	blood:	n/a	n/a
2	POLR2A	chr16:81956281-81957314	GM12892	blood:	n/a	n/a
3	POLR2A	chr16:81956619-81956944	GM12878	blood:	n/a	n/a
4	POLR2A	chr16:81956467-81957044	GM12892	blood:	n/a	n/a
5	POLR2A	chr16:81956827-81957038	GM12891	blood:	n/a	n/a
6	POLR2A	chr16:81956551-81957397	GM12891	blood:	n/a	n/a
7	POLR2A	chr16:81956542-81957410	GM12892	blood:	n/a	n/a
8	POLR2A	chr16:81956458-81957342	GM12891	blood:	n/a	n/a
9	POLR2A	chr16:81956546-81957083	GM12891	blood:	n/a	n/a
10	POLR2A	chr16:81956500-81957345	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
PLCG2	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4341735	1.00[AFR][1000 genomes]
rs7197171	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs8191075	1.00[AMR][1000 genomes]
rs8191093	1.00[AMR][1000 genomes]
rs8191134	1.00[MEX][hapmap]
rs8191163	1.00[MEX][hapmap]
rs9924213	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81909400-81961800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr16:81920400-81982000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr16:81924400-81961600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr16:81924400-81970000	Weak transcription	Fetal Intestine Large	intestine
5	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:81933000-81983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr16:81934600-81961200	Weak transcription	Colonic Mucosa	Colon
8	chr16:81934800-81971600	Weak transcription	Right Atrium	heart
9	chr16:81936000-81982000	Weak transcription	Gastric	stomach
10	chr16:81936000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr16:81937000-81969800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr16:81941600-81966000	Weak transcription	Placenta	Placenta
13	chr16:81945000-81984600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr16:81946200-81985200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr16:81946600-81958400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:81947000-81969200	Weak transcription	Pancreas	Pancrea
17	chr16:81948000-81958200	Weak transcription	Fetal Intestine Small	intestine
18	chr16:81950600-81982000	Strong transcription	GM12878-XiMat	blood
19	chr16:81951200-81962200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:81951400-81971400	Weak transcription	Left Ventricle	heart
21	chr16:81952000-81982800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr16:81952400-81958800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr16:81952400-81983000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr16:81952600-81958400	Strong transcription	Primary hematopoietic stem cells	blood
25	chr16:81952600-81970600	Strong transcription	Spleen	Spleen
26	chr16:81952600-81981800	Strong transcription	Primary B cells from cord blood	blood
27	chr16:81952800-81958800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr16:81952800-81973000	Strong transcription	Duodenum Mucosa	Duodenum
29	chr16:81952800-81984600	Strong transcription	Liver	Liver
30	chr16:81953000-81977400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr16:81953400-81962200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr16:81954800-81957800	Weak transcription	Adipose Nuclei	Adipose
33	chr16:81954800-81962200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr16:81954800-81991800	Weak transcription	Fetal Thymus	thymus
35	chr16:81955200-81957200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr16:81955200-81957600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr16:81955400-81970200	Weak transcription	Brain Substantia Nigra	brain
38	chr16:81956000-81957200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr16:81956400-81971400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr16:81956400-81971600	Weak transcription	Fetal Kidney	kidney
41	chr16:81956600-81957000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr16:81956600-81957400	Genic enhancers	Lung	lung
43	chr16:81956800-81962000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links