Variant report

Variant	rs4485916
Chromosome Location	chr5:113591058-113591059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12523408	0.89[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4293905	0.91[ASN][1000 genomes]
rs4460133	0.89[CHB][hapmap];0.81[YRI][hapmap];0.85[ASN][1000 genomes]
rs4466147	0.94[ASN][1000 genomes]
rs4602617	0.82[ASN][1000 genomes]
rs6859418	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882727	chr5:113548400-113602162	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029021	chr5:113551892-113599644	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537865	chr5:113551892-113599644	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4485916	TMEM232	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113588200-113591400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:113588600-113595800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:113590800-113591200	Flanking Active TSS	Fetal Heart	heart
4	chr5:113590800-113591400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:113590800-113591400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:113590800-113591400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:113591000-113591200	Enhancers	Fetal Stomach	stomach
8	chr5:113591000-113591400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:113591000-113591400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:113591000-113591600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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