Variant report

Variant	rs6859418
Chromosome Location	chr5:113581435-113581436
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10038304	0.81[EUR][1000 genomes]
rs10041267	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10045558	0.81[EUR][1000 genomes]
rs10463657	0.83[EUR][1000 genomes]
rs10900693	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11241267	0.81[EUR][1000 genomes]
rs12153188	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12523408	0.80[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12652393	0.81[EUR][1000 genomes]
rs4074169	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4131322	0.83[EUR][1000 genomes]
rs4429843	0.81[EUR][1000 genomes]
rs4460133	0.93[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4482897	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4485916	0.80[ASN][1000 genomes]
rs4505938	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4615290	0.81[EUR][1000 genomes]
rs61415455	0.80[EUR][1000 genomes]
rs6594788	0.80[EUR][1000 genomes]
rs6594797	0.83[EUR][1000 genomes]
rs6594801	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6862991	0.80[EUR][1000 genomes]
rs6872938	0.86[EUR][1000 genomes]
rs6891422	0.83[EUR][1000 genomes]
rs6894277	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7701720	0.81[EUR][1000 genomes]
rs9326913	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882727	chr5:113548400-113602162	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029021	chr5:113551892-113599644	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537865	chr5:113551892-113599644	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113579400-113585600	Weak transcription	Fetal Heart	heart
2	chr5:113580000-113581600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:113581400-113581600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:113581400-113585800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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